Now showing items 1-20 of 1969

    ORMDL proteins are a conserved new family of endoplasmic reticulum membrane proteins 

    Tusón Segarra, Miquel; Marfany i Nadal, Gemma; Herrero, Enric; Balcells Comas, Susana; Gonzàlez-Duarte, Roser; Hjelmqvist, Lars (2009-03-20)

    Background: Annotations of completely sequenced genomes reveal that nearly half of the genes identified are of unknown function, and that some belong to uncharacterized gene families. To help resolve such issues, information ...

    Use of the lambda Red recombinase system to produce recombinant prophages carrying antibiotic resistance genes 

    Serra Moreno, Ruth; Acosta, Sandra; Hernalsteens, Jean Pierre; Jofre i Torroella, Joan; Muniesa Pérez, Ma. Teresa (2009-03-20)

    Background: The Red recombinase system of bacteriophage lambda has been used to inactivate chromosomal genes in E. coli K-12 through homologous recombination using linear PCR products. The aim of this study was to induce ...

    Characterization of alternatively spliced products and tissue-specific isoforms of USP28 and USP25 

    Valero Gils, Rebeca; Bayés Colomer, Mònica; Sánchez-Font, Ma. Francisca; Gonzàlez-Angulo, Olga; Gonzàlez-Duarte, Roser; Marfany i Nadal, Gemma (2009-03-26)

    Background: The ubiquitin-dependent protein degradation pathway is essential for the proteolysis of intracellular proteins and peptides. Deubiquitinating enzymes constitute a complex protein family involved in a multitude ...

    The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes 

    Permanyer i Ugartemendia, Jon; Gonzàlez-Duarte, Roser; Albalat Rodríguez, Ricard (2009-03-26)

    Background: Non-long terminal repeat (non-LTR) retrotransposons have contributed to shaping the structure and function of genomes. In silico and experimental approaches have been used to identify the non-LTR elements of ...

    Genesis and evolution of the Evx and Mox genes and the extended Hox and ParaHox gene clusters 

    Minguillón Gil, Carolina; Garcia Fernández, Jordi (2009-03-26)

    Background: Hox and ParaHox gene clusters are thought to have resulted from the duplication of a ProtoHox gene cluster early in metazoan evolution. However, the origin and evolution of the other genes belonging to the ...

    Genome-wide DNA polymorphism analyses using VariScan 

    Hutter, Stephan; Vilella Bertran, Albert; Rozas Liras, Julio A. (2009-03-26)

    Podeu consultar el programari associat a: http://hdl.handle.net/2445/53449

    Thermal evolution of gene expression profiles in Drosophila subobscura 

    Laayouni, Hafid; García-Franco, Francisco; Chávez-Sandoval, Blanca E.; Trotta, Vincenzo; Beltran i Agulló, Sergi; Corominas, Montserrat (Corominas Guiu); Santos Maroño, Mauro (2009-03-26)

    Background: Despite its pervasiveness, the genetic basis of adaptation resulting in variation directly or indirectly related to temperature (climatic) gradients is poorly understood. By using 3-fold replicated laboratory ...

    Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura 

    García Guerreiro, María Pilar; Chávez-Sandoval, Blanca E.; Balanyà i Maymó, Joan; Serra i Camó, Lluís; Fontdevila, Antonio (2009-03-30)

    Background: Transposable elements (TEs) constitute a substantial amount of all eukaryotic genomes. They induce an important proportion of deleterious mutations by insertion into genes or gene regulatory regions. However, ...

    Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila 

    Blanco, Enrique; Pignatelli, Miguel; Beltran i Agulló, Sergi; Punset, Adrià; Pérez-Lluch, Sílvia; Serras Rigalt, Florenci; Guigó Serra, Roderic; Corominas, Montserrat (Corominas Guiu) (2009-03-30)

    Background: The trithorax group (trxG) and Polycomb group (PcG) proteins are responsible for the maintenance of stable transcriptional patterns of many developmental regulators. They bind to specific regions of DNA and ...

    Functional dissection of the ash2 and ash1 transcriptomes provides insights into the transcriptional basis of wing phenotypes and reveals conserved protein interactions 

    Beltran i Agulló, Sergi; Angulo i Parera, Mireia; Pignatelli, Miguel; Serras Rigalt, Florenci; Corominas, Montserrat (Corominas Guiu) (2009-03-31)

    Background: The trithorax group (trxG) genes absent, small or homeotic discs 1 (ash1) and 2 (ash2) were isolated in a screen for mutants with abnormal imaginal discs. Mutations in either gene cause homeotic transformations ...

    Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution 

    Vieira, Filipe G.; Sánchez-Gracia, Alejandro; Rozas Liras, Julio A. (2009-03-31)

    Background: Chemoreception is a widespread mechanism that is involved in critical biologic processes, including individual and social behavior. The insect peripheral olfactory system comprises three major multigene families: ...

    EGASP: the human ENCODE Genome Annotation Assessment Project 

    Guigó Serra, Roderic; Flicek, Paul; Abril Ferrando, Josep Francesc, 1970-; Reymond, Alexandre; Lagarde, Julien; Denoeud, France; Antonarakis, Stylianos E.; Ashburner, Michael; Bajic, Vladimir B.; Birney, Ewan; Castelo, Robert; Eyras, Eduardo; Ucla, Catherine; Gingeras, Thomas R.; Harrow, Jennifer; Hubbard, Tim; Lewis, Suzanna E.; Reese, Martin G. (2009-03-31)

    Background: Non-long terminal repeat (non-LTR) retrotransposons have contributed to shaping the structure and function of genomes. In silico and experimental approaches have been used to identify the non-LTR elements of ...

    RPS4Y gene family evolution in primates 

    Andrés Viñas, Olga; Kellermann, Thomas; López-Giráldez, Francesc; Rozas Liras, Julio A.; Domingo-Roura, Xavier; Bosch Gallego, Montserrat (2009-03-31)

    Background: The RPS4 gene codifies for ribosomal protein S4, a very well-conserved protein present in all kingdoms. In primates, RPS4 is codified by two functional genes located on both sex chromosomes: the RPS4X and RPS4Y ...

    Evolutionary dynamics of molecular markers during local adaptation: a case study in Drosophila subobscura 

    Simões, Pedro; Pascual Berniola, Marta; Santos, Josiane; Rose, Michael R.; Matos, Margarida (2009-03-31)

    Background: Natural selection and genetic drift are major forces responsible for temporal genetic changes in populations. Furthermore, these evolutionary forces may interact with each other. Here we study the impact of an ...

    Document sobre dones i ciència 

    Gonzàlez-Duarte, Roser (2010-03-01)

    El grup ha analitzat l'activitat científica, acadèmica i professional de les dones i com a resultat d'aquestes anàlisis detecta una sèrie de problemes de discriminació que obliguen a adoptar polítiques de gènere en les ...

    Gens, gènere i ciència 

    Gonzàlez-Duarte, Roser (2010-03-02)

    Lliçó inaugural del curs 2006-2007 Universitat de Barcelona

    Impact of incorrect assumptions on the covariance structure of random effects and/or residuals in nonlinear mixed models for repeated measures data 

    El Halimi, Rachid; Ocaña i Rebull, Jordi (2010-03-08)

    In this paper we analyse, using Monte Carlo simulation, the possible consequences of incorrect assumptions on the true structure of the random effects covariance matrix and the true correlation pattern of residuals, over ...

    On the consequences of misspecifing assumptions concerning residuals distribution in a repeated measures and nonlinear mixed modelling context 

    El Halimi, Rachid; Ocaña i Rebull, Jordi (2010-03-08)

    In this paper we describe the results of a simulation study performed to elucidate the robustness of the Lindstrom and Bates (1990) approximation method under non-normality of the residuals, under different situations. ...

    Supplementary material to Ocaña, J., Sánchez, M.P., Sánchez, A. and Carrasco, J.L. ¿On equivalence and bioequivalence testing¿, SORT, 32(2), 2008 

    Ocaña i Rebull, Jordi; Sánchez Olavarría, María Pilar; Sànchez, Àlex (Sànchez Pla); Carrasco Jordan, Josep Lluís (2010-03-08)

    Equivalence testing is the natural approach to many statistical problems. First, its main application, bioequivalence testing, is reviewed. The basic concepts of bioequivalence testing (2×2 crossover designs, TOST, interval ...

    A measure of stability as a criterion for the verification and analysis of simulation models 

    Monleón Getino, Toni; Ruiz de Villa, Carmen; Ocaña i Rebull, Jordi (2010-04-20)

    The aim of this study is to define a new statistic, PVL, based on the relative distance between the likelihood associated with the simulation replications and the likelihood of the conceptual model. Our results coming from ...