The need to implement FAIR principles in biomolecular simulations

Author

Amaro, Rommie E.

Åqvist, Johan

Bahar, Ivet

Battistini, Federica

Bellaïche, Adam

Beltran, Daniel

Biggin, Philip C.

Bonomi, Massimiliano

Bowman, Gregory R.

Bryce, Richard A.

Bussi, Giovanni

Carloni, Paolo

Case, David A.

Cavalli, Andrea

Chang, Chia-En A.

Cheatham, Thomas E.

Cheung, Margaret S.

Chipot, Christophe

Chong, Lillian T.

Choudhary, Preeti

Cisneros, G. Andrés

Clementi, Cecilia

Collepardo Guevara, Rosana

Coveney, Peter

Covino, Roberto

Crawford, T. Daniel

Delemotte, Lucie

Essex, Jonathan W.

Fraternali, Franca

Gao, Jiali

Gelpí, Josep Lluís

Gervasio, Francesco Luigi

González Nilo, Fernando Danilo

Groot, Bert L. de

Grubmüller, Helmut

Guenza, Marina G.

Guzman, Horacio V.

Harris, Sarah

Head Gordon, Teresa

Hernandez, Rigoberto

Hospital, Adam

Huang, Niu

Huang, Xuhui

Hummer, Gerhard

Iglesias Fernández, Javier

Jensen, Jan H.

Jha, Shantenu

Jiao, Wanting

Jorgensen, William L.

Kamerlin, Shina Caroline Lynn

Khalid, Syma

Laughton, Charles A.

Levitt, Michael

Limongelli, Vittorio

Lindahl, Erik

Lindorff-Larsen, Kresten

Loverde, Sharon

Lundborg, Magnus

Luo, Yun Lyna

Luque Garriga, F. Xavier

Lynch, Charlotte I.

MacKerell, Alexander

Magistrato, Alessandra

Marrink, Siewert J.

Martin, Hugh

McCammon, J. Andrew

Merz, Kenneth

Moliner, Vicent

Mulholland, Adrian J.

Murad, Sohail

Naganathan, Athi N.

Nangia, Shikha

Noe, Frank

Noy Freixa, Agnès

Olah, Julianna

O’Mara, Megan L.

Ondrechen, Mary Jo

Onuchic, Jose N.

Onufriev, Alexey

Orozco López, Modesto

Osuna, Sílvia

Palermo, Giulia

Panchenko, Anna R.

Pantano, Sergio

Parish, Carol

Parrinello, Michele

Peraro, Matteo dal

Perez Acle, Tomas

Pérez, Alberto

Perilla, Juan R.

Pettitt, B. Montgomery

Pietropaolo, Adriana

Piquemal, Jean Philip

Poma, Adolfo B.

Praprotnik, Matej

Ramos, Maria João

Ren, Pengyu

Reuter, Nathalie

Roitberg, Adrian

Rosta, Edina

Rothlisberger, Ursula

Roux, Benoit

Rovira Virgili, Maria Del Carme

Sanbonmatsu, Karissa Y.

Schlick, Tamar

Shaytan, Alexey K.

Simmerling, Carlos

Smith, Jeremy C.

Sugita, Yuji

Świderek, Katarzyna

Taiji, Makoto

Tao, Peng

Tieleman, D. Peter

Tikhonova, Irina G.

Tirado Rives, Julian

Tuñón, Iñaki

van der Kamp, Marc W.

van der Spoel, David

Velankar, Sameer

Vivo, Marco de

Voth, Gregory A.

Wade, Rebecca

Warshel, Ariel

Welborn, Valerie Vaissier

Wetmore, Stacey D.

Wheeler, Travis J.

Wong, Chung F.

Yang, Lee Wei

Zacharias, Martin

Publication date

2025-05-13T13:21:51Z

2025-10-01T05:10:19Z

2025-04-02

2025-05-13T13:21:51Z

Abstract

In the Big Data era, a change of paradigm in the use of molecular dynamics is required. Trajectories should be stored under FAIR (findable, accessible, interoperable and reusable) requirements to favor its reuse by the community under an open science paradigm.

Document Type

Article


Accepted version

Language

English

Publisher

Nature Publishing Group

Related items

Versió postprint del document publicat a: https://doi.org/10.1038/s41592-025-02635-0

Nature Methods, 2025, vol. 22, p. 641-645

https://doi.org/10.1038/s41592-025-02635-0

Recommended citation

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Rights

(c) Amaro, R. E. et al., 2025