dc.contributor.author
Bofill i Villà, Josep M.
dc.contributor.author
Ribas Ariño, Jordi
dc.contributor.author
Valero Montero, Rosendo
dc.contributor.author
Albareda, Guillermo
dc.contributor.author
Moreira, Ibério de Pinho Ribeiro
dc.contributor.author
Quapp, Wolfgang
dc.date.issued
2020-03-17T11:03:07Z
dc.date.issued
2020-08-21T05:10:26Z
dc.date.issued
2019-08-21
dc.date.issued
2020-03-17T11:03:08Z
dc.identifier
https://hdl.handle.net/2445/152811
dc.description.abstract
An algorithm to locate transition states on a potential energy surface (PES) is proposed and described. The technique is based on the GAD method where the gradient of the PES is projected into a given direction and also perpendicular to it. In the proposed method, named GAD-CD, the projection is not only applied to the gradient but also to the Hessian matrix. Then, the resulting Hessian matrix is block diagonal. The direction is updated according to the GAD method. Furthermore, to ensure stability and to avoid a high computational cost, a trust region technique is incorporated and the Hessian matrix is updated at each iteration. The performance of the algorithm in comparison with the standard ascent dynamics is discussed for a simple two dimensional model PES. Its efficiency for describing the reaction mechanisms involving small and medium size molecular systems is demonstrated for five molecular systems of interest.
dc.format
application/pdf
dc.publisher
American Chemical Society
dc.relation
Versió postprint del document publicat a: https://doi.org/10.1021/acs.jctc.8b01061
dc.relation
Journal of Chemical Theory and Computation, 2019, vol. 15, num. 10, p. 5426-5439
dc.relation
https://doi.org/10.1021/acs.jctc.8b01061
dc.relation
info:eu-repo/grantAgreement/EC/H2020/752822/EU//BeBOP
dc.rights
(c) American Chemical Society , 2019
dc.rights
info:eu-repo/semantics/openAccess
dc.source
Articles publicats en revistes (Química Inorgànica i Orgànica)
dc.subject
Dinàmica molecular
dc.subject
Algorismes computacionals
dc.subject
Química física
dc.subject
Molecular dynamics
dc.subject
Computer algorithms
dc.subject
Physical and theoretical chemistry
dc.title
Interplay between the gentlest ascent dynamics method and conjugate directions to locate transition states
dc.type
info:eu-repo/semantics/article
dc.type
info:eu-repo/semantics/acceptedVersion