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    A multiscale model of complex endothelial cell dynamics in early angiogenesis 

    Stepanova, D.; Byrne, H.M.; Maini, P.K.; Alarcon, T. (2021-01-07)

    We introduce a hybrid two-dimensional multiscale model of angiogenesis, the process by which endothelial cells (ECs) migrate from a pre-existing vascular bed in response to local environmental cues and cell-cell interactions, ...

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    Author Correction: Response outcomes gate the impact of expectations on perceptual decisions 

    Hermoso-Mendizabal, A.; Hyafil, A.; Rueda-Orozco, P.E.; Jaramillo, S.; Robbe, D.; de la Rocha, J. (2020-07-07)

    Correction to: Nature Communications https://doi.org/10.1038/s41467-020-14824-w, published online 26 February 2020. The original version of the Supplementary Information file associated with this Article contained several ...

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    Bivalent chromatin as a therapeutic target in cancer: An in silico predictive approach for combining epigenetic drugs 

    Alarcón, T.; Sardanyés, J.; Guillamon, A.; Menendez, J.A. (2021-06-21)

    Tumour cell heterogeneity is a major barrier for efficient design of targeted anti-cancer therapies. A diverse distribution of phenotypically distinct tumour-cell subpopulations prior to drug treatment predisposes to ...

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    Host-virus evolutionary dynamics with specialist and generalist infection strategies: Bifurcations, bistability, and chaos 

    Nurtay, A.; Hennessy, M.G.; Alsedà, L.; Elena, S.F.; Sardanyés, J. (2020-05-13)

    In this work, we have investigated the evolutionary dynamics of a generalist pathogen, e.g., a virus population, that evolves toward specialization in an environment with multiple host types. We have particularly explored ...

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    Increasing temperature alters the within-host competition of viral strains and influences virus genetic variability 

    Alcaide, C.; Sardanyés, J.; Elena, S.F.; Gómez, P. (2021-02-23)

    Environmental conditions can affect viral accumulation, virulence and adaptation, which have implications in the disease outcomes and efficiency of control measures. Concurrently, mixed viral infections are relevant in ...

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    Is evolution predictable? Quantitative genetics under complex genotype-phenotype maps 

    Milocco, L.; Salazar-Ciudad, I. (2019-12-28)

    A fundamental aim of post-genomic 21st century biology is to understand the genotype–phenotype map (GPM) or how specific genetic variation relates to specific phenotypic variation. Quantitative genetics approximates such ...

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    On the evolution and development of morphological complexity: A view from gene regulatory networks 

    Hagolani, P.F.; Zimm, R.; Vroomans, R.; Ciudad, I.S. (2021-02-24)

    How does morphological complexity evolve? This study suggests that the likelihood of mutations increasing phenotypic complexity becomes smaller when the phenotype itself is complex. In addition, the complexity of the ...

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    PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets 

    Pradier, L.; Tissot, T.; Fiston-Lavier, A.-S.; Bedhomme, S. (2021-06-26)

    BACKGROUND: Plasmids are mobile genetic elements that often carry accessory genes, and are vectors for horizontal transfer between bacterial genomes. Plasmid detection in large genomic datasets is crucial to analyze their ...

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    Quantifying the under-reporting of uncorrelated longitudal data: the genital warts example 

    Moriña, D.; Fernández-Fontelo, A.; Cabaña, A.; Puig, P.; Monfil, L.; Brotons, M.; Diaz, M. (2021-01-06)

    Background: Genital warts are a common and highly contagious sexually transmitted disease. They have a large economic burden and affect several aspects of quality of life. Incidence data underestimate the real occurrence ...

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    Reproduction number for an age of infection structured model 

    Barril, C.; Calsina, À; Cuadrado, S.; Ripoll, J. (2023-06-23)

    We study the basic reproduction number (R0) in an epidemic model where infected individuals are initially asymptomatic and structured by the time since infection. At the beginning of an epidemic outbreak the computation ...

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    Synthetic biology for terraformation lessons from mars, earth, and the microbiome 

    Conde-Pueyo, N.; Vidiella, B.; Sardanyés, J.; Berdugo, M.; Maestre, F.T.; Lorenzo, V.; Solé, R. (2020-02-09)

    What is the potential for synthetic biology as a way of engineering, on a large scale, complex ecosystems? Can it be used to change endangered ecological communities and rescue them to prevent their collapse? What are the ...