Use of Gene Ontology semantic information in protein interaction data visualization

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To access the full text documents, please follow this link: http://hdl.handle.net/2117/9708

dc.contributor	Universitat Politècnica de Catalunya. Departament d'Enginyeria de Sistemes, Automàtica i Informàtica Industrial
dc.contributor	Universitat Politècnica de Catalunya. SISBIO - Senyals i Sistemes Biomèdics
dc.contributor.author	Massanet Vila, Raimon
dc.contributor.author	Caminal Magrans, Pere
dc.contributor.author	Perera Lluna, Alexandre
dc.date	2008
dc.identifier.citation	Massanet, R.; Caminal, P.; Perera, A. Use of Gene Ontology semantic information in protein interaction data visualization. A: IEEE International Conference on BioInformatics and BioEngineering. "8th IEEE International Conference on BioInformatics and BioEngineering". Atenes: IEEE Press. Institute of Electrical and Electronics Engineers, 2008, p. 1-5.
dc.identifier.citation	10.1109/BIBE.2008.4696741
dc.identifier.uri	http://hdl.handle.net/2117/9708
dc.language.iso	eng
dc.publisher	IEEE Press. Institute of Electrical and Electronics Engineers
dc.relation	http://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=10.1109%2FBIBE.2008.4696741&x=39&y=17
dc.rights	info:eu-repo/semantics/openAccess
dc.subject	Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica
dc.subject	Biology computing
dc.subject	Data visualisation
dc.subject	Ontologies (artificial intelligence)
dc.subject	Information services
dc.subject	Proteomics
dc.subject	Gene ontology project
dc.subject	Ontologies (Recuperació de la informació)
dc.title	Use of Gene Ontology semantic information in protein interaction data visualization
dc.type	info:eu-repo/semantics/publishedVersion
dc.type	info:eu-repo/semantics/conferenceObject
dc.description.abstract	The Gene Ontology project is an effort to structure knowledge on biological products and processes by adding semantic information to them. This is done in a systematic way so that this additional information can be automatically processed. In this contribution a protein-protein interaction visualization algorithm is proposed, which combines protein interaction data with Gene Ontology semantic information. The information is integrated using a semantic distance measure defined in ontologies or taxonomies. Multidimensional scaling is applied to this measure and the output complements protein interaction data in building an interaction visualization map.
dc.description.abstract	Peer Reviewed

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